Test ID BALLF B-Cell Acute Lymphoblastic Leukemia (B-ALL), FISH
Useful For
Detecting a neoplastic clone associated with the common chromosome abnormalities seen in patients with B-cell acute lymphoblastic leukemia (B-ALL)
Identifying and tracking known chromosome abnormalities in patients with B-ALL and tracking response to therapy
As an adjunct to conventional chromosome studies in patients with B-ALL
Reflex Tests
Test ID | Reporting Name | Available Separately | Always Performed |
---|---|---|---|
_PBCT | Probe, +2 | No, (Bill Only) | No |
_PADD | Probe, +1 | No, (Bill Only) | No |
_PB02 | Probe, +2 | No, (Bill Only) | No |
_PB03 | Probe, +3 | No, (Bill Only) | No |
_IL25 | Interphases, <25 | No, (Bill Only) | No |
_I099 | Interphases, 25-99 | No, (Bill Only) | No |
_I300 | Interphases, ≥100 | No, (Bill Only) | No |
Testing Algorithm
This test includes a charge for application of the first probe set (2 FISH probes) and professional interpretation of results. Additional charges will be incurred for all reflex probes performed. Analysis charges will be incurred based on the number of cells analyzed per probe set. If no cells are available for analysis, no analysis charges will be incurred.
We recommend the following testing algorithm for patients with B-cell acute lymphoblastic leukemia (B-ALL):
-At diagnosis, conventional cytogenetic studies (CHRBM / Chromosome Analysis, Hematologic Disorders, Bone Marrow) and a complete B-ALL FISH panel should be performed.
-At follow-up, conventional cytogenetic studies (CHRBM / Chromosome Analysis, Hematologic Disorders, Bone Marrow) and targeted B-ALL FISH probes based on the abnormalities identified in the diagnostic study can be evaluated.
-If the patient clinically relapses, a conventional chromosome study is useful to identify cytogenetic changes in the neoplastic clone or the possible emergence of a new therapy-related myeloid clone.
Panel includes testing for the following abnormalities using the probes listed:
t(9;22), BCR/ABL1
t(12;21), ETV6/RUNX1
t(1;19), PBX1/TCF3
+4 / +10 / +17, D4Z1/D10Z1/D17Z1
11q23 rearrangement, MLL
9p-, CDKN2A/D9Z1
14q32 rearrangement, IGH
17p-, TP53/D17Z1
When an MLL rearrangement is identified, reflex testing will be performed to identify the translocation partner. Probes include identification of t(4;11)(q21;q23) AFF1/MLL, t(6;11)(q27;q23) MLLT4/MLL, t(9;11)(p22;q23) MLLT3/MLL, t(10;11)(p12;q23) MLLT10/MLL, t(11;19)(q23;p13.1) MLL/ELL, and t(11;19)(q23;p13.3) MLL/MLLT1.
When an IGH rearrangement is identified, reflex testing will be performed using the CRLF2/IGH probe set to identify a potential t(X;14)(p22.3;q32) or t(Y;14)(p11.32;q32).
Method Name
Fluorescence In Situ Hybridization (FISH)
Reporting Name
ALL (B-cell), FISHSpecimen Type
VariesProvide a reason for referral with each specimen. The laboratory will not reject testing if this information is not provided, but appropriate testing and interpretation may be compromised or delayed.
Forms: If not ordering electronically, complete, print, and send a Hematopathology/Cytogenetics Test Request Form (T726) with the specimen
(http://www.mayomedicallaboratories.com/it-mmfiles/hematopathology-request-form.pdf)
Advise Express Mail or equivalent if not on courier service.
Submit only 1 of the following specimens:
Specimen Type: Blood
Container/Tube: Green top (sodium heparin)
Specimen Volume: 7-10 mL
Collection Instructions:
1. Invert several times to mix
blood.
2. Other anticoagulants are not recommended and are harmful to the
viability of the cells.
Specimen Type: Bone marrow
Container/Tube: Green top (sodium heparin)
Specimen Volume: 1-2 mL
Collection Instructions:
1. Invert several times to mix
bone marrow.
2. Other anticoagulants are not recommended and are harmful to the
viability of the cells.
Specimen Minimum Volume
Blood: 2 mL/Bone Marrow: 1 mL
Specimen Stability Information
Specimen Type | Temperature | Time |
---|---|---|
Varies | Ambient (preferred) | |
Refrigerated |
Clinical Information
In the United States, the incidence of acute lymphoblastic leukemia (ALL) is roughly 6,000 new cases per year (as of 2009), or approximately 1 in 50,000. ALL accounts for approximately 70% of all childhood leukemia cases (ages 0 to 19 years), making it the most common type of childhood cancer. Approximately 85% of pediatric cases of ALL are B-cell lineage (B-ALL) and 15% are T-cell lineage (T-ALL). It has a peak incidence at 2 to 5 years of age. The incidence decreases with increasing age, before increasing again at around 50 years of age. ALL is slightly more common in males than females. There is an increased incidence of ALL in individuals with Down syndrome, Fanconi anemia, Bloom syndrome, ataxia telangiectasia, X-linked agammaglobulinemia, and severe combined immunodeficiency. The overall cure rate for ALL in children is about 90% and about 45% to 60% of adults have long-term disease-free survival. CRLF2/IGH rearrangements are more commonly observed in patients with Down syndrome or of Hispanic descent.
Specific genetic abnormalities are identified in the majority of cases of B-ALL, either by conventional chromosome studies or FISH studies. Each of the genetic subgroups are important to detect and can be critical prognostic markers. The decision for early transplantation may be made if t(9;22)(q34;q11.2), MLL translocations, RUNX1 duplication/amplification or a hypodiploid clone is identified. In contrast, if ETV6/RUNX1 fusion is detected by FISH or hyperdiploidy is identified by chromosome studies, the patient has a favorable prognosis and transplantation is rarely considered.
A combination of cytogenetic and FISH testing is currently recommended in all pediatric and adult patients to characterize the B-ALL clone for the important prognostic genetic subgroups. A summary of the characteristic chromosome abnormalities identified in B-ALL is listed in the following table.
Common Chromosome Abnormalities in B-cell Acute Lymphoblastic Leukemia |
||
Cytogenetic change |
Typical demographic |
Risk category |
t(12;21)(p13;q22), ETV6(TEL)/RUNX1(AML1) |
Pediatric |
Favorable |
Hyperdiploidy |
Pediatric |
Favorable |
t(1;19)(q23;p13.3), PBX1/TCF3 |
Pediatric |
Intermediate |
t(9;22)(q34;q11.2) BCR/ABL1 |
Pediatric/Adult |
Unfavorable |
iAMP21, RUNX1 |
Pediatric |
Unfavorable |
del(9p), CDKN2A(p16) |
All ages |
Variable |
t(11q23;var), MLL |
All ages |
Unfavorable |
t(4;11)(q21;q23), AFF1(AF4)/MLL |
All ages |
Unfavorable |
t(6 ;11)(q27;q23), MLLT4/MLL |
All ages |
Unfavorable |
t(9;11)(p22;q23), MLLT3(AF9)/MLL |
All ages |
Unfavorable |
t(10;11)(p12;q23), MLLT10/MLL |
All ages |
Unfavorable |
t(11;19)(q23;p13.1), MLL/ELL |
All ages |
Unfavorable |
t(11;19)(q23;p13.3), MLL/MLLT1(ENL) |
All ages |
Unfavorable |
t(14q32;var), IGH |
All ages |
Variable |
t(X;14)(p22;q32)/t(Y;14)(p11;q32), CRLF2/IGH |
Adolescent/Young Adult |
Unfavorable |
del(17p), TP53 |
All ages |
Unfavorable |
Complex karyotype (≥4 abnormalities) |
Adult |
Unfavorable |
Low hypodiploidy/near triploidy |
Adult |
Unfavorable |
Near-haploid/hypodiploid |
All ages |
Unfavorable |
Reference Values
An interpretive report will be provided.
Cautions
This test is not approved by the U.S. Food and Drug Administration and it is best used as an adjunct to existing clinical and pathologic information.
FISH is not a substitute for conventional chromosome studies because the latter detects many chromosome abnormalities associated with other hematological disorders that would be missed by this FISH panel test.
Bone marrow is the preferred specimen type for this FISH test. If bone marrow is not available, a blood specimen may be used if there are malignant cells in the blood specimen (as verified by hematopathology).
Day(s) Performed
Samples processed Monday through Sunday. Results reported Monday through Friday, 8 a.m.-5 p.m. CST.
Report Available
7 daysPerforming Laboratory

Test Classification
This test was developed using an analyte specific reagent. Its performance characteristics were determined by Mayo Clinic in a manner consistent with CLIA requirements. This test has not been cleared or approved by the U.S. Food and Drug Administration.CPT Code Information
88271x2, 88291 – DNA probe, each (first probe set), Interpretation and report
88271x2 – DNA probe, each; each additional probe set (if appropriate)
88271x1 – DNA probe, each; coverage for sets containing 3 probes (if appropriate)
88271x2 – DNA probe, each; coverage for sets containing 4 probes (if appropriate)
88271x3 – DNA probe, each; coverage for sets containing 5 probes (if appropriate)
88274 w/modifier 52 – Interphase in situ hybridization, <25 cells, each probe set (if appropriate)
88274 – Interphase in situ hybridization, 25 to 99 cells, each probe set (if appropriate)
88275 – Interphase in situ hybridization, 100 to 300 cells, each probe set (if appropriate)