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Test ID CYCMS 21-Hydroxylase Gene (CYP21A2), Full Gene Analysis, Prenatal

Useful For

Ambiguous genitalia detected on prenatal ultrasound, particularly when fetus is confirmed XX female by chromosome analysis

 

Pregnancies at risk for 21-hydroxylase deficient congenital adrenal hyperplasia based on family history

Reflex Tests

Test ID Reporting Name Available Separately Always Performed
MATCC Maternal Cell Contamination, B Yes No
CULFB Fibroblast Culture for Genetic Test Yes No
CULAF Amniotic Fluid Culture/Genetic Test Yes No

Testing Algorithm

If amniotic fluid (nonconfluent cultured cells) is received, amniotic fluid culture/genetic test will be added per laboratory protocol and charged separately.

 

If chorionic villus specimen (nonconfluent cultured cells) is received, fibroblast culture for genetic test will be added per laboratory protocol and charged separately.

 

For any prenatal specimen that is received, maternal cell contamination testing will be added per laboratory protocol and charged separately.

Method Name

Polymerase Chain Reaction (PCR) Amplification/DNA Sequencing and Deletion Detection by Multiplex Ligation-Dependent Probe Amplification (MLPA)

(PCR is utilized pursuant to a license agreement with Roche Molecular Systems, Inc.) 

Reporting Name

CYP21A2 Full Gene Analysis,Prenatal

Specimen Type

Varies

Forms:

1. CYP21A2 Gene Testing Patient Information Sheet (Supply T663) is required and available in Special Instructions

2. Informed Consent for Genetic Testing (Supply T576) is required and available in Special Instructions

3. New York Clients: Informed consent is required. Please document on the request form or electronic order that a copy is on file. An Informed Consent for Genetic Testing (Supply T576) is available in Special Instructions.

 

Due to the complexity of prenatal testing, consultation with the laboratory is required for all prenatal testing. Contact on call endocrine genetic counselor, pager: 507-266-2094. Prenatal specimens can be sent Monday through Thursday and must be received by 5 p.m. CST on Friday in order to be processed appropriately.

 

Prenatal Specimens

All prenatal specimens must be accompanied by parental blood specimens. The maternal sample is required for maternal cell contamination studies (MATCC / Maternal Cell Contamination, Molecular Analysis). Both maternal and paternal samples will be tested for CYP21A2 at no charge, if needed for prenatal interpretation.

 

Maternal whole blood: Order CYPPS / 21-Hydroxylase Gene (CYP21A2), Full Gene Analysis and MATCC / Maternal Cell Contamination, Molecular Analysis

Paternal whole blood: Order CYPPS / 21-Hydroxylase Gene (CYP21A2), Full Gene Analysis

 

Submit only 1 of the following acceptable specimens for prenatal testing:

 

Specimen Type: Amniotic fluid

Container/Tube:

Preferred: Screw-capped, sterile centrifuge tubes

Acceptable: T-25 flasks of confluent cultured cells

Specimen Volume: 20 mL

Collection Instructions:

1. Obtain amniotic fluid.

2. Transfer specimen to 2 sterile centrifuge tubes.

3. Specimen cannot be frozen.

Specimen Stability Information: Refrigerated (preferred)/Ambient

Additional Information:

1. A separate culture charge will be assessed under CULAF / Amniotic Fluid Culture for Genetic Testing.

2. Alternatively, we will accept 2 T-25 flasks of confluent cultured cells from another laboratory sent refrigerated.

 

Specimen Type: Chorionic villi

Container/Tube:

Preferred: 15-mL centrifuge tube

Acceptable: T-25 flasks of confluent cultured cells

Specimen Volume: 20 mg

Collection Instructions:

1. Obtain chorionic villus specimen.

2. Send specimen in transport media in 15-mL centrifuge tube.

3. Specimen cannot be frozen.

Specimen Stability Information: Refrigerated (preferred)

Additional Information:

1. A separate culture charge will be assessed under CULFB / Fibroblast Culture for Genetic Testing.

2. Alternatively, we will accept 2 T-25 flasks of confluent cultured cells from another laboratory sent refrigerated.

 

Specimen Type: Extracted DNA

Container/Tube: Plastic microtube

Specimen Volume: 50 mcL (concentration: ≥80 ng/mcL)

Specimen Stability Information: Refrigerated (preferred)/Ambient

Specimen Minimum Volume

DNA: 50 mcL/Amniotic Fluid: 10 mL/Chorionic Villus: 5 mg

Specimen Stability Information

Specimen Type Temperature Time
Varies Refrigerated (preferred)
  Ambient 
  Frozen 

Clinical Information

Congenital adrenal hyperplasia (CAH), with an incidence rate of 1 in 10,000 to 18,000 live births, is one of the most common inherited syndromes. The condition is characterized by impaired cortisol production due to inherited defects in steroid biosynthesis. The clinical consequences of CAH, besides diminished cortisol production, depend on which enzyme is affected and whether the loss of function is partial or complete.

 

In >90% of CAH cases, the affected enzyme is 21-steroid hydroxylase, encoded by the CYP21A2 gene located on chromosome 6 within the highly recombinant human histocompatibility complex locus. Since sex steroid production pathways branch off proximal to this enzymatic step, affected individuals will have increased sex steroid levels, resulting in virilization of female infants. If there is some residual enzyme activity, a nonclassical phenotype results, with variable degrees of masculinization starting in later childhood or adolescence. On the other end of the severity spectrum are patients with complete loss of 21-hydroxylase function. This leads to both cortisol and mineral corticosteroid deficiency and is rapidly fatal if untreated due to loss of vascular tone and salt wasting.

 

Because of its high incidence rate, 21-hydroxylase deficiency is screened for in most United States newborn screening programs, typically by measuring 17-hydroxyprogesterone concentrations in blood spots by immunoassay. Confirmation by other testing strategies (eg, LC-MS/MS, CAHBS / Congenital Adrenal Hyperplasia [CAH] Newborn Screening, Blood Spot), or retesting after several weeks, is required for most positive screens because of the high false-positive rates of the immunoassays (due to physiological elevations of 17-hydroxyprogesterone in premature babies and immunoassay cross-reactivity with other steroids). In a small percentage of cases, additional testing will fail to provide a definitive diagnosis. In addition, screening strategies can miss many nonclassical cases, which may present later in childhood or adolescence and require more extensive steroid hormone profiling, including testing before and after adrenal stimulation with adrenocorticotropic hormone (ACTH)-1-24.

 

For these reasons, genetic diagnosis plays an important ancillary role in both classical and nonclassical cases. In addition, the high carrier frequency (approximately 1 in 50) for CYP21A2 mutations makes genetic diagnosis important for genetic counseling. Genetic testing plays a role in prenatal diagnosis of 21-hydroxylase deficiency. However, accurate genetic diagnosis continues to be a challenge because most of the mutations arise from recombination events between CYP21A2 and its highly homologous pseudogene, CYP21A1P (transcriptionally inactive). In particular, partial or complex rearrangements (with or without accompanying gene duplication events), which lead to reciprocal exchanges between gene and pseudogene, can present severe diagnostic challenges. Comprehensive genetic testing strategies must therefore allow accurate assessment of most, or all, known rearrangements and mutations, as well as unequivocal determination of whether the observed changes are located within a potentially transcriptionally active genetic segment. Testing of additional family members is often needed for clarification of genetic test results.

Reference Values

An interpretive report will be provided.

Cautions

Because of the complexity of the genetic structure of the CYP21A2 locus, and the possibility that a patient's diagnosis may be due to other gene defects, genetic testing results should be correlated carefully with clinical and biochemical data.

 

This testing strategy is superior to approaches previously used, but may still miss some complex and large-scale genetic rearrangements or deletions, as well as genetic changes in intronic regions or in far upstream or downstream gene-regulatory elements that impair CYP21A2 gene expression. This can lead to false-negative test results.

 

Rarely, unknown polymorphisms in primer- or probe-binding sites can result in false-negative test results (DNA sequencing) or either false-positive or false-negative results (multiplex ligation-dependent probe amplification; MLPA deletion screening), due to selective allelic drop-out. False-negative or false-positive results can occur in MLPA deletion screening assays due to poor DNA quality.

 

In addition to disease-related probes, the multiplex ligation-dependent probe amplification technique utilizes probes localized to other chromosomal regions as internal controls. In certain circumstances, these control probes may detect other diseases or conditions for which this test was not specifically intended. Results of the control probes are not normally reported. However, in cases where clinically relevant information is identified, the ordering physician will be informed of the result and provided with recommendations for any appropriate follow-up testing. 

 

Patients without genetic evidence for disease-causing CYP21A2 genetic changes may still have congenital adrenal hyperplasia (CAH), but due to a different enzyme defect. Additional and expanded biochemical steroid profiling is, therefore, recommended if the clinical picture is strongly suggestive of CAH.

Day(s) Performed

Monday; 8 a.m.

Report Available

Varies; DNA: 12 days; Amniotic fluid/chorionic villi (confluent culture): 15 days

Performing Laboratory

Mayo Medical Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. This test has not been cleared or approved by the U.S. Food and Drug Administration.

CPT Code Information

81402-CYP21A2 (cytochrome P450, family 21, subfamily A, polypeptide 2) (eg, congenital adrenal hyperplasia, 21-hydroxylase deficiency), common variants (eg, IVS2-13G, P30L, I172N, exon 6 mutation cluster [I235N, V236E, M238K], V281L, L307FfsX6, Q318X, R356W, P453S, G110VfsX21, 30-kb deletion variant)

 

81405-CYP21A2 (cytochrome P450, family 21, subfamily A, polypeptide 2) (eg, steroid 21-hydroxylase isoform, congenital adrenal hyperplasia), full gene sequence

 

Amniotic Fluid Culture for Genetic Testing

88235-Tissue culture for amniotic fluid (if appropriate)

88240-Cryopreservation (if appropriate)

 

Fibroblast Culture for Genetic Testing

88233-Tissue culture, skin or solid tissue biopsy (if appropriate)

88240-Cryopreservation (if appropriate)

 

Maternal Cell Contamination

81265-Comparative analysis using Short Tandem Repeat (STR) markers; patient and comparative specimen (eg, pre-transplant recipient and donor germline testing, post-transplant non-hematopoietic recipient germline [eg, buccal swab or other germline tissue sample] and donor testing, twin zygosity testing or maternal cell contamination of fetal cells)

NY State Approved

Conditional