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Test ID KITE KIT Mutation Exons 8-11 and 17, Hematologic Neoplasms, Sequencing

Useful For

The prognostic assessment of acute myeloid leukemias with core binding factor translocations (inv16 or t[16;16] CBFB-MYH11 or t[8;21] RUNX1-RUNX1T1) and to help establish the diagnosis in some cases of mastocytosis

Method Name

Mutation Detection in DNA Using Sanger Sequencing

(PCR is utilized pursuant to a license agreement with Roche Molecular Systems, Inc)

Reporting Name

KIT Mutation, Hematologic Neoplasm

Specimen Type

Varies

The following information is required:

1. Pertinent clinical history

2. Clinical or morphologic suspicion

3. Date of collection

4. Specimen source

 

Forms:

1. Hematopathology Patient Information (T676) in Special Instructions

2. If not ordering electronically, complete, print, and send a Hematopathology/Cytogenetics Test Request Form (T726) with the specimen (www.mayomedicallaboratories.com/media/customer-service/forms/hematopathology-request-form.pdf).

 

Specimen must arrive within 168 hours (7 days) of collection.

 

Submit only 1 of the following specimens:

 

Specimen Type: Blood

Container/Tube: Lavender top (EDTA) or yellow top (ACD solution B)

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood.

2. Send specimen in original tube.

3. Label specimen as blood.

 

Specimen Type: Bone marrow

Container/Tube: Lavender top (EDTA) or yellow top (ACD solution B)

Specimen Volume: 2 mL

Collection Instructions:

1. Invert several times to mix bone marrow.

2. Send specimen in original tube.

3. Label specimen as bone marrow.

 

Specimen Type: Extracted DNA from blood or bone marrow

Container/Tube: 1.5- to 2-mL tube with indication of volume and concentration of the DNA

Specimen Volume: Entire specimen

Collection Instructions: Label specimen as extracted DNA from blood or bone marrow.

 

Specimen Type: Paraffin-embedded tissue

Container/Tube: Paraffin block

 

Specimen Type: Paraffin-embedded bone marrow aspirate clot

Container/Tube: Paraffin block

 

Specimen Type: Paraffin-embedded bone marrow aspirate clot

Container/Tube: Paraffin block

 

Specimen Type: Unstained Slides

Container/Tube: Unstained tissue slides

Specimen Volume: 10 slides

Specimen Minimum Volume

Blood, Bone Marrow: 1 mL; Extracted DNA: 20 mcL

Specimen Stability Information

Specimen Type Temperature Time
Varies Ambient (preferred) 7 days
  Refrigerated  7 days

Clinical Information

Acquired mutations in the KIT gene are identified in a subset of acute myeloid leukemias (AML) characterized by inv16 or t(16;16) CBFB-MYH11 or t(8;21) RUNX1-RUNX1T1 genetic abnormalities (approximately 10%-20% of cases) and in this setting, the additional presence of KIT gene mutation has been described as an adverse prognostic factor in some studies. KIT mutations in AML tend to involve exons 8 through 11 and 17, although the p.Asp816Val (D816V) variant that is highly prevalent in systemic mastocytosis is less common in AML. Mastocytosis is a hematologic disorder characterized by abnormal mast cell expansion in the bone marrow and extramedullary organ sites (eg, skin, gastrointestinal tract). Disease can be localized to skin (ie, cutaneous mastocytosis) or present systemically, with variable features of disease aggressiveness and symptomatology. Mutations in the KIT gene are identified in a large majority of patients with both cutaneous mastocytosis (CM) and systemic mastocytosis (SM). The D816V abnormality is identified in most patients with SM and this finding represents an important minor diagnostic criterion in the 2008 WHO classification. The D816V is less commonly seen in CM, although single nucleotide variants are present in other KIT exons. Rare cases of familial mastocytosis are also described with KIT mutations involving exons 8 and 9. Although KIT gene mutation represents an important diagnostic marker for SM, the number of bone marrow mast cells is often limited in aspirate samples. Therefore, if SM is clinically and pathologically suspected, KIT testing should first proceed with a sensitive and specific screen for the D816V (KITB / KIT Asp816Val Mutation Analysis, Blood; KITBM / KIT Asp816Val Mutation Analysis, Qualitative PCR, Bone Marrow; or KITAS / KIT Asp816Val Mutation Analysis, Qualitative PCR) prior to consideration of KIT gene sequencing, based on the greatly enhanced sensitivity of the PCR test for this particular variant. In AML, KIT sequencing is preferred, given the wider spectrum of mutations in other KIT exons.

Reference Values

An interpretive report will be provided

Cautions

This test is intended to evaluate for the presence of somatically acquired KIT mutations in hematologic malignant neoplasms, specifically core binding factor (CBF) acute myeloid leukemia with t(8;21)/RUNX1-RUNX1T1 or inv(16) or t(16;16)/CBFB-MYH11, although it may be useful in some cases of mastocytosis. This test does not detect mutations in the entire KIT gene, but is limited to alterations in exons 8, 9, 10, 11, and 17. The analytic sensitivity of this assay is approximately 20%. It is important to note that in many instances of systemic mastocytosis (SM), mast cell abundance in bone marrow aspirates is very limited and this test may result a false-negative for KIT mutation. Therefore, if SM is suspected clinically or pathologically, testing for the specific p.Asp816Val (D816V) by allele-specific PCR method should be strongly considered as the initial test (KITB / KIT Asp816Val Mutation Analysis, Blood; KITBM / KIT Asp816Val Mutation Analysis, Qualitative PCR, Bone Marrow; or KITAS / KIT Asp816Val Mutation Analysis, Qualitative PCR), prior to pursuing KIT sequencing.

 

The test is not intended for KIT mutation evaluation in solid tumors (eg, melanoma, gastrointestinal stromal tumor); for these indications, refer to specific tests offered by Molecular Genetics laboratory at Mayo Clinic.

Day(s) Performed

Monday through Friday

Report Available

5 days

Performing Laboratory

Mayo Medical Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. This test has not been cleared or approved by the U.S. Food and Drug Administration.

CPT Code Information

81272 – KIT (v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog) (eg, gastrointestinal stromal tumor [GIST], acute myeloid leukemia, melanoma), gene analysis, targeted sequence analysis (eg, exons 8, 11, 13, 17, 18)

NY State Approved

Conditional