Test ID NGSAM Next Generation Sequencing (NGS), Acute Myeloid Leukemia
Useful For
Evaluation of acute myeloid leukemia (AML) at the time of diagnosis, to assist in appropriate classification and prognosis
This test can be used at the time of relapsed AML to determine if a different gene mutation profile is present
Testing Algorithm
See Targeted Genes Interrogated by Acute Myeloid Leukemia by Next Generation Sequencing in Special Instructions for a list of the genes and exons targeted by this test.
Special Instructions
Method Name
Somatic Mutation Detection by Next-Generation Sequencing (NGS), Hematologic Neoplasms
Reporting Name
NGS Acute Myeloid LeukemiaSpecimen Type
VariesThe following information is required:
1. Clinical diagnosis
2. Pertinent clinical history
3. Clinical or morphologic suspicion
4. Date of collection
5. Specimen source
Forms:
1. Hematopathology Patient Information Sheet (Supply T676)
2. If not ordering electronically, complete, print, and send a Hematopathology/Cytogenetics Test Request Form (T726) with the specimen (http://www.mayomedicallaboratories.com/it-mmfiles/hematopathology-request-form.pdf).
Bone marrow or peripheral blood specimens must arrive within 14 days of collection.
Submit only 1 of the following specimens:
Specimen Type: Bone marrow aspirate (preferred)
Container/Tube:
Preferred: Lavender top (EDTA) or yellow top or (ACD)
Acceptable: Green top (heparin)
Specimen Volume: 2 mL
Specimen Stability: Ambient
Collection Instructions:
1. Invert several times to mix bone marrow.
2. Send specimen in original tube.
3. Label specimen as bone marrow.
Specimen Type: Peripheral blood
Container/Tube:
Preferred: Lavender top (EDTA) or yellow top (ACD)
Acceptable: Green top (heparin)
Specimen Volume: 3 mL
Specimen Stability: Ambient
Collection Instructions:
1. Invert several times to mix blood.
2. Send specimen in original tube.
3. Label specimen as blood.
Specimen Type: Extracted DNA
Container/Tube: 1.5- to 2-mL tube with indication of volume and concentration of the DNA.
Specimen Volume: Entire specimen
Specimen Stability: Frozen/Refrigerated/Ambient
Collection Instructions: Label specimen as extracted DNA and source of specimen.
Specimen Minimum Volume
Blood, Bone Marrow: 1 mL/Extracted DNA: 100 mcL at 20 ng/mcL concentration
Specimen Stability Information
Specimen Type | Temperature | Time |
---|---|---|
Varies | Ambient | 14 days |
Clinical Information
Next-generation sequencing (NGS) is a rapidly evolving and complex methodology that can interrogate multiple regions of genomic tumor DNA in a single assay. Many hematologic neoplasms, including acute myeloid leukemia (AML), are characterized by morphologic or phenotypic similarities, but can have characteristic somatic mutations in many genes. In addition, many cases of AML lack a clonal cytogenetic finding at diagnosis (normal karyotype) and can be better classified according to gene mutation profile. The presence and pattern of gene mutations in AML can provide critical prognostic information and may help in guiding therapeutic management decisions by physicians.
Reference Values
An interpretive report will be provided.
Cautions
This test is a targeted next-generation sequencing (NGS) (panel) assay that encompasses 19 genes with variable full exon, partial region, or hot spot coverage (depending on specific locus). This test will therefore not detect other genetic abnormalities in genes or regions outside the specified target areas. The test detects single base substitutions (ie, point mutations), as well as small insertion or deletion type events, but it does not detect gene rearrangements (ie, translocations), gene fusions, copy number alterations, or large scale (segmental chromosome region) deletions and complex changes.
This assay does not distinguish between somatic and germ line alterations in analyzed gene regions, particularly with variant allele frequencies (VAF) near 50% or 100%. If nucleotide alterations in genes associated with germ line mutation syndromes are present and there is also a strong clinical suspicion or family history of malignant disease predisposition, additional genetic testing and appropriate counseling may be indicated. Mutations detected between 5% to 10% VAF may indicate low-level (ie, subclonal) tumor populations, although the clinical significance of these findings may not be clear. A low incidence of gene mutations associated with myeloid neoplasms can be detected in blood samples from individuals with advancing age who do not have a hematologic neoplasm (clonal hematopoiesis of indeterminate potential) and such alterations may not be clearly distinguishable from tumor-associated mutations, especially if detected as a sole abnormality. Some apparent mutations classified as variants of undetermined significance (VUS) may represent rare or low frequency polymorphisms.
Prior treatment for a hematologic malignancy could affect the results obtained in this assay. In particular, prior allogeneic hematopoietic stem cell transplant (HSCT) may cause difficulties in resolving somatic or polymorphic alterations, or in assigning variant calls correctly to donor and recipient fractions, if pertinent clinical or laboratory information (eg, chimerism engraftment status) is not provided.
Correlation with clinical, histopathologic and additional laboratory findings is required for final interpretation of these results. The final interpretation of results for clinical management of the patient is the responsibility of the managing physician.
Day(s) Performed
Tuesday, Friday
Report Available
14 daysPerforming Laboratory

Test Classification
This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. This test has not been cleared or approved by the U.S. Food and Drug Administration.CPT Code Information
81450-Targeted genomic sequence analysis panel, hematolymphoid neoplasm or disorder, DNA and RNA when performed, 5-50 genes (eg, BRAF, CEBPA, DNMT3A, EZH2, FLT3, IDH1, IDH2, JAK2, KRAS, KIT, MLL, NRAS, NPM1, NOTCH1), interrogation for sequence variants and copy number variants or rearrangements, or isoform expression of mRNA expression levels, if performed.