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Test ID PM3CX Lymph3Cx Assay, Primary Mediastinal Large B-cell Lymphoma and Diffuse Large B-cell Lymphoma, mRNA Gene Expression, NanoString, Tissue


Ordering Guidance


This test does not include a pathology consultation. If a pathology consultation is requested, PATHC / Pathology Consultation will be ordered and performed at an additional charge.



Necessary Information


Pathology report (final or preliminary) must accompany specimen in order for testing to be performed. At minimum, it should contain the following information:

1. Patient name

2. Block number-must be on all blocks, slides, and paperwork (can be handwritten on the paperwork)

3. Tissue collection date

4. Source of the tissue



Specimen Required


Submit only 1 of the following specimens:

 

Preferred:

Specimen Type: Tissue slides

Slides: 1 stained and 7 unstained

Collection Instructions: Submit 1 slide stained with hematoxylin and eosin and 7 consecutive, unstained, 5-micron thick sections placed on positively charged slides.

Additional Information: Paraffin embedded specimens can be from any anatomic location (skin, soft tissue, lymph node, etc).

 

Acceptable:

Specimen Type: Tissue block

Collection Instructions: Submit a formalin-fixed, paraffin-embedded tumor tissue block.


Secondary ID

606164

Useful For

Only indicated for formalin-fixed paraffin-embedded specimens from patients diagnosed with large B-cell lymphoma

Additional Tests

Test ID Reporting Name Available Separately Always Performed
AZSLR Slide Review No, (Bill Only) Yes

Testing Algorithm

When this test is ordered, slide review will always be performed at an additional charge.

Method Name

Gene Expression by Digital Counting of Fluorescent Bar-Coded Probes

Reporting Name

Lymph3Cx, Lg Bcell Lymphoma,mRNA,Ts

Specimen Type

Tissue, Paraffin

Specimen Minimum Volume

Minimum 60% tumor with or without macrodissection.
Minimum required unstained tissue section input: 0.12 mm(3)
Slides: If the tumor surface area is less than or equal to 4 mm(2), submit a minimum of 3 slides; if the tumor surface area is 5 to 11 mm(2), submit a minimum of 2 slides; if the tumor surface area is greater than 11 mm(2), submit a minimum of 1 slide.

Specimen Stability Information

Specimen Type Temperature Time
Tissue, Paraffin Ambient (preferred)
  Refrigerated 

Clinical Information

Primary mediastinal large B-cell lymphoma (PMBCL) is recognized as a distinct entity in the World Health Organization (WHO) classification and accounts for approximately 2% to 3% of all non-Hodgkin lymphomas (NHL).(1) Currently, diagnosis relies on consensus of histopathology, clinical variables, and presentation (as it can present outside the mediastinum), giving rise to diagnostic inaccuracy in routine practice. This is complicated by recent studies that identified lymphomas sharing molecular and morphological features with PMBCL, yet without involvement in the mediastinum.(2) Since classification can impact therapeutic approach, the need has arisen for a more robust method to identify PMBCL vs diffuse large B-cell lymphoma (DLBCL).

 

Gene expression profiling studies have demonstrated that PMBCL can be distinguished from subtypes of DLBCL based on gene expression signatures in fresh/frozen tissues,(3,4) which are often difficult to obtain in conventional clinic settings. Members of the Lymphoma/Leukemia Molecular Profiling Project have developed a robust and accurate molecular classification assay (Lymph3Cx) for the distinction of PMBCL from DLBCL subtypes based on gene expression measurements in clinically-available FFPE tissue,(5) which has been subsequently validated against this published data in the Molecular Diagnostics Arizona Lab.

 

Research suggests that novel therapeutic approaches might have preferential benefit in PMBCL as compared to DLBCL.(6,7,8,9)

 

The Lymph3Cx assay builds upon the previously described and validated Lymph2Cx assay.(4,10) The Lymph3Cx assay is a qualitative assay utilizing a 58-gene signature (45 endogenous targets and 13 housekeeping genes), reporting calculated scores to distinguish PMBCL from DLBCL.(5) After determination of PMBCL vs DLBCL status, the built-in Lymph2Cx assay then provides the cell-of-origin (COO) for samples determined to be DLBCL as previously described.

 

DLBCL is the most common form of NHL, accounting for up to 30% of newly diagnosed cases in the United States. DLBCL is an aggressive (fast-growing) lymphoma caused by the uncontrollable growth and proliferation of B lymphocytes. It can arise in lymph nodes or outside of the lymphatic system in the gastrointestinal tract, testes, thyroid, skin, breast, bone, or brain. Although DLBCL is the most common form of NHL, there are distinct subtypes that may affect prognosis (how well patients will do with standard treatment) and treatment options. Since 2008, WHO classification of lymphoid neoplasms has recognized 2 distinct molecular subgroups of DLBCL: a germinal center B-cell (GCB) type, an activated B-cell (ABC) type, as well as a third group of cases that do not belong to either (unclassifiable). These were all originally grouped together based on shared morphology but can be distinctly separated based on their biology, particularly their gene expression pattern. According to a review of the 2016 revision of the WHO guidelines,(1) a better understanding of the molecular pathogenesis of these 2 subgroups has led to the investigation of more specific therapeutic strategies based on COO classification. Current data suggests that the ABC subtype of DLBCL has a poorer prognosis compared to the GCB subtype or unclassifiable cases; and that the ABC subtype may differentially respond to specific therapies.(11,12,13)

Reference Values

Not applicable

Cautions

Test results should be interpreted in the context of clinical findings, tumor sampling, and other laboratory data.

 

Paraffin-embedded tissues that have been decalcified are sometimes unsuccessful for analysis. The pathologist reviewing the hematoxylin and eosin-stained slide may find it necessary to cancel testing.

Day(s) Performed

Monday through Friday

Report Available

7 to 12 days

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

0120U

88381

NY State Approved

No