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Test ID SOS1 SOS1, Full Gene Sequence, Blood

Useful For

Aiding in the diagnosis of SOS1-associated Noonan syndrome and hereditary gingival fibromatosis

Profile Information

Test ID Reporting Name Available Separately Always Performed
SOS1F SOS1, Full Gene Sequence No Yes

Method Name

Polymerase Chain Reaction (PCR) Followed by DNA Sequence Analysis

(PCR is utilized pursuant to a license agreement with Roche Molecular Systems, Inc.)

Reporting Name

SOS1, Full Gene Sequence, B

Specimen Type

Whole Blood EDTA

Multiple gene sequencing tests can be performed on a single specimen after a single extraction. See Multiple Whole Blood EDTA Genotype Tests in Special Instructions for a list of tests that can be ordered together.

 

Container/Tube: Lavender top (EDTA)

Specimen Volume: 3 mL

Collection Instructions: Send specimen in original tube.

Additional Information: Include ordering physician's name and phone number with the specimen.

Forms:

1. Noonan Spectrum Gene Testing Patient Information Sheet (Supply T689) is required; in Special Instructions

2. New York Clients-Informed consent is required. Please document on the request form or electronic order that a copy is on file. An Informed Consent for Genetic Testing (Supply T576) is available in Special Instructions.

3. If not ordering electronically, complete, print, and send a Cardiovascular Test Request Form (T724) with the specimen (http://www.mayomedicallaboratories.com/it-mmfiles/cardiovascular-request-form.pdf).

Specimen Minimum Volume

0.5 mL

Specimen Stability Information

Specimen Type Temperature Time
Whole Blood EDTA Ambient (preferred)
  Refrigerated 

Clinical Information

Noonan syndrome (NS) is an autosomal dominant disorder of variable expressivity characterized by short stature, congenital heart defects, characteristic facial dysmorphology, unusual chest shape, developmental delay of varying degree, cryptorchidism, and coagulation defects, among other features. Heart defects include pulmonary valve stenosis (20%-50%), hypertrophic cardiomyopathy (20%-30%), atrial septal defects (6%-10%), ventricular septal defects (approximately 5%), and patent ductus arteriosus (approximately 3%). Facial features, which tend to change with age, may include hypertelorism, downward slanting eyes, epicanthal folds, and low-set and posteriorly rotated ears. Mild mental retardation is seen in up to one-third of adults.

 

The incidence of NS is estimated to be between 1 in 1,000 and 1 in 2,500, although subtle expression in adulthood may cause this number to be an underestimate. There is no apparent prevalence in any particular ethnic group. Several syndromes have overlapping features with NS, including cardiofaciocutaneous (CFC), Costello, Williams, Aarskog, and LEOPARD (lentigines, electrocardiographic conduction abnormalities, ocular hypertelorism, pulmonic stenosis, abnormal genitalia, retardation of growth, and deafness) syndromes.

 

NS is genetically heterogeneous, with 4 genes currently associated with the majority of cases: PTPN11, RAF1, SOS1, and KRAS. Heterozygous mutations in NRAS, HRAS, BRAF, SHOC2, MAP2K1, MAP2K2, and CBL have also been associated with a smaller percentage of NS and related phenotypes. All of these genes are involved in a common signal transduction pathway, the Ras-MAPK pathway, which is important for cell growth, differentiation, senescence, and death. Molecular genetic testing identifies PTPN11 mutations in 50% of individuals. Mutations in RAF1 are identified in approximately 3% to 17%, SOS1 approximately 10%, and KRAS less than 5% of affected individuals. NS can be sporadic and due to new mutations; however, an affected parent can be recognized in up to 30% to 75% of families.

 

The SOS1 gene comprises 23 exons and encodes a 150-kd autoinhibited RAS-specific guanine nucleotide exchange factor. After receptor tyrosine kinase (RTK) stimulation, SOS1 is recruited to the plasma membrane, where it acquires a catalytically active conformation and catalyzes activation of the Ras-MAPK pathway. Reported NS-associated mutations in SOS1 are missense, gain-of-function mutations and are believed to abolish autoinhibition, which leads to increased and prolonged Ras activation.

 

In addition to NS and related phenotypes, an insertion mutation in SOS1 that creates a premature stop codon at residue 1106 was identified in an extensive Brazilian family with hereditary gingival fibromatosis, an overgrowth condition characterized by a benign, slowly progressive, nonhemorrhagic, fibrous enlargement of maxillary and mandibular keratinized gingiva.

 

Genetic testing for SOS1 mutations can allow for the confirmation of a suspected genetic disease. Confirmation of NS or other associated phenotypes allows for proper treatment and management of the disease and preconception, prenatal, and family counseling.

Reference Values

An interpretive report will be provided.

Cautions

Patients who have received a heterologous blood transfusion within the preceding 6 weeks, or who have received an allogeneic blood or marrow transplant, can have inaccurate genetic test results due to presence of donor DNA.  

 

Related genetic tests available include testing for a specific familial mutation (SOSK / SOS1 Gene, Known Mutation, Blood), which should be used when testing individuals who are at risk for a SOS1 mutation that has been previously identified in the family.

 

Absence of a mutation does not preclude the diagnosis of Noonan syndrome or another SOS1-related disorder unless a specific mutation has already been identified in an affected family member.

 

This method will not detect mutations that occur in the introns (except in the splicing regions) and regulatory regions of the gene and large rearrangement-type mutations.

 

Sometimes a genetic alteration of unknown significance may be identified. In this case, testing of appropriate family members may be useful to determine pathogenicity of the alteration.

Day(s) Performed

Varies

Report Available

7 days

Performing Laboratory

Mayo Medical Laboratories in Rochester

CPT Code Information

81406-SOS1 (son of sevenless homolog 1) (eg, Noonan syndrome, gingival fibromatosis), full gene sequence

NY State Approved

Yes